Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| LGG | rs7712899 | chr5:92908786 | A/T | 5.09E-5 | 394 | 15.2 | 15.13 | 25.62 | KM Plot |
| LGG | rs7714176 | chr5:156022574 | A/T | 0.000121 | 406 | 16.75 | 13.87 | 10.7 | KM Plot |
| LGG | rs7715034 | chr5:92754902 | G/A | 1.66E-5 | 406 | 15.17 | 16.6 | 18.57 | KM Plot |
| LGG | rs77184568 | chr2:17815188 | A/G | 3.12E-5 | 401 | 15.45 | 15.67 | 8.07 | KM Plot |
| LGG | rs77203625 | chr7:56058308 | A/G | 1.58E-10 | 406 | 15.32 | 15.93 | 7.8 | KM Plot |
| LGG | rs77245075 | chr2:17810302 | G/T | 6.55E-5 | 402 | 15.63 | 14.73 | 8.07 | KM Plot |
| LGG | rs77338463 | chr19:23567542 | A/T | 2.97E-6 | 407 | 15.25 | 15.67 | 7.8 | KM Plot |
| LGG | rs77351962 | chr4:47630331 | G/A | 2.87E-6 | 405 | 14.57 | 16.47 | 13.87 | KM Plot |
| LGG | rs77362812 | chr5:155968414 | G/T | 5.05E-6 | 407 | 15.27 | 15.23 | 15.37 | KM Plot |
| LGG | rs7739598 | chr6:46932541 | C/T | 1.51E-5 | 407 | 15.03 | 16.73 | 12.5 | KM Plot |
| LGG | rs77448595 | chr10:33371663 | C/A | 6.66E-16 | 402 | 15.17 | 15.83 | 4.6 | KM Plot |
| LGG | rs7745082 | chr6:36065622 | A/C | 9.31E-10 | 407 | 15.63 | 15.15 | 6.15 | KM Plot |
| LGG | rs7745536 | chr6:36005691 | A/G | 9.4E-10 | 407 | 15.7 | 14.95 | 6.15 | KM Plot |
| LGG | rs7745927 | chr6:36005675 | G/A | 9.4E-10 | 407 | 15.7 | 14.95 | 6.15 | KM Plot |
| LGG | rs7746238 | chr6:46926848 | G/T | 1.65E-5 | 404 | 15.15 | 16.1 | 12.5 | KM Plot |